I have the EVC IV on my Stealth and it's great. There's no reason it shouldn't work on a Sy/Ty.
Port 1 should go to one of the fittings on the intake manifold...either the back one or one of the two under the front of the manifold by the T-stat housing.
Port 2 should run to the compressor scroll outlet fitting. it's right there at the top of the turbo.
Port 3 goes to the wastegate.
Did you do the learning procedure? I dont' know how well it'll work on an automatic vehicle. Your best bet is to put it in drive (D) then go as slow as possible to where when you floor it the tranny won't downshift to second. Figure out how fast it is then initialize the learning procedure (the display will show "--L--"). The zero lag stock turbo & already high RPM may make the controller have a hard time figuring out spool time. If it won't beep and go to the high ("--H--") mode then beep again after another 3rd gear pull then you'll probably have to set it up manually by altering the "offset". It's range is 50-150 with 100 being neutral. Since you're overboosting you need raise the offset until the boost comes down to whatever boost level you've selected.
Make sure the SW <> PO switch on the back of the unit is set to "SW".
Ensure you use the shortest vaccum lines as possible while keeping the stepping motor away from high heat or any water whatsoever.